Index of Resources
- Sequence Comparison & Homology-Identity Analyses
- Keyword Search & Data Retrieval Servers
- Sequence Motifs/Patterns Recognition & Analysis
- Protein Domains/Motifs/Patterns Databases
- Sequence Alignment Servers & Databases
- Multifunction Protein Sequence Analysis Tools
- Sequence Presentation Tools
- Sequence Analysis: Guides, Tutorials, & Primers
| Sequence Comparison & Homology-Identity Analyses
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| Sequence Homology Analysis
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- AbCheck - Kabat Database with Query Sequence Search - UCL (UK)
- AllAllDb - Search the All-Against-All Database of SwissProt - ETH-Z (Switzerland)
- ATLAS Sequence Scan - Homology Search - MIPS (Germany)
- BEAUTY - BLAST Enhanced Alignment Utility - BCM (US)
- BLAST - Basic Local Alignment Search Tool - NCBI (US)
- BLAST2 - Gapped BLAST - NCBI (US)
- BLITZ - Sequence Similarity Search of the SwissProt Database
- BLOCKS Database - Query sequence comparison against the BLOCKS database of highly Conserved Regions of Protein
- DAPMAIL - Fast Sequence Database Searching - EXpasy (Switzerland)
- dFLASH - Homologous Sequence Analysis & Retreival - EXpasy (Switzerland)
- FASTA - Pearson and Lipman(Algorithm)Sequence Comparison Service
- FASTAPAT - FASTA-based PIMA (Pattern-Induced Multiple Sequence Alignment) Database - BCM (US)
- HMMER - Profile Hidden Markov Model-based DB Searching - IFOM-FIRC (Italy)
- HPT Homology Search - MIPS (Germany)
- PepPepSearch - Search SwissProt Database for a Protein Sequence - ETH-Z (Switzerland)
- ProfileScan Server - Sequence Search against Seq Profiles Database - ISREC (Switzerland)
- ProteinInfo - PROWL (US)
- PSCAN - Search Database against User-Specified Sequence - U Stockholm (Sweden)
- Smith-Waterman (Algorithm) Sequence Comparison Service
| Gene Search Using a Protein Sequence
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| Protein Search Using a Nucleotide Sequence
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| Keyword Search & Data Retrieval Servers
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| Sequence Motifs/Patterns Recognition & Analysis
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| Search Protein Sequence DB for Query Motif
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| General Multi-Motif Search
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- Ballast - Conservation/Segment profiling of BLAST results - IGBMC (France)
- Dst - Repeat Sequence Identity Search - VGC (US)
- FASTA-PAT - Search of a Pattern Database with a Query Protein Sequence - BCM (US)
- FPAT - Regular Expression (Pattern) Searching of a Protein Database - WUSTL (US)
- FTHOM - Protein Domain Homology Analysis Service - ABC
- HMM Search - Motif Search of a Protein Sequence using the Pfam-A Database of Protein Domains
- HPT Pattern Recognition Search - Search PIR for User-defined Motif - MIPS (Germany)
- MAST - Motif Alignment and Search Tool
- MEME - Multiple EM for Motif Elicitation
- MOTIF - Pattern Search Service
- Motifs in Protein Databases - Search of Protein DB with Custom Query Motif - VGC (US)
- PatScan - Sequence Pattern Search
- PatternFind - Pattern Search of SwissProt and GenPept Protein Sequence Databases - ISREC (Switzerland)
- PATTINPROT - Query Sequence Pattern Search - Pole Bio-Informatique Lyonnaise (France)
- Pratt2.1 - Pattern Discovery Tool
- PRINTS/PROSITE Scanner - Search the PRINTS and PROSITE Databases with Query Sequence - UCL (UK)
- ProDom BLAST - BLAST Search against the Protein Domains Database (PRODOM) - INRA (France)
- Profile Server - Profile Motifs Search - SDSC (US)
- ProfileScan - Compare a sequence against PROSITE Motifs Database - ISREC (Switzerland)
- PROSITE - Profile Motifs Searches of ProSite Database
- Protein Motif Analysis - Compare a query sequence against PROSITE - IBCP (France)
- PROTFAM - Protein Sequence Homology (Super)Families Browser and Keyword Search Service - MIPS (Germany)
- PSMS-DNA - Determines if a Protein Motif is encoded by a DNA Sequence - U Minnesota (US)
- PSMS-PRO - Determines if a Protein Motif is present in a Database of Protein Sequences - U Minnesota (US)
- REPRO - Recognition of Protein Sequence Repeats Search Service - EMBL-Heidelberg (Germany)
- Search Pattern - Search for Sequence Pattern - U Claude Bernard Lyon1 (France)
- SeqhuntII - Search of Kabat Database with a Query Pattern/Motif - NWU (US)
- SPAPD - Screening Pattern or Alignment against a Protein databank - BIPCB-MSU (Russia)
- SSBASE - Protein Domains Library Searching
- SwissShop - ProSite Information Query Service - ExPasy (Switzerland)
| Peptide Binding Prediction
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| Post-Translational Modification
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- NetOglyc - Search query sequence for potential O-glycosylation sites - CBSA (Denmark)
- PhosphoBase - Protein Phosphorylation Site Sequence Database - CBSA (Denmark)
| Transmembrane Spanning Motifs
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| Transcriptional Factors/Elements
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| Protein Domains/Motifs/Patterns Databases
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| Sequence Alignment Servers & Databases
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| Sequence Alignment Analyses
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| Sequence Alignment Databases
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- PIRALN - Protein Sequence Alignment Database - PIR-NBRF (US)
- PROTFAM - Protein Sequence Homology (Super)Families Database (Browser and Keyword Search) - MIPS (Germany)
| Multi-Function Protein Sequence Analysis Tools
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| Sequence Presentation Tools
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- BOXSHADE - Pretty Printing and Shading of Multiple-Alignment Files - ISREC (Switzerland)
- The Protein Colourer - Adds residue-specific color enhancement to protein sequences - EBI (UK)
| Sequence Analysis: Guides, Tutorials & Primers
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Last modified 13 March 2003 by Christopher
M. Smith at CMSMBR - SDSC
Copyright © 1996-2001 Christopher M. Smith & The Regents of the University of California
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