DNA Sequence Databases & Search Engines BR3.5 - Human Repeated DNA Database - VGC (US) CpG Islands Database - Human Genes and Their Associated CpG Islands - BEN (Belgium) dbEST - Database of Expressed Sequence Tags dbEST - EBI (UK) dbEST - NCBI (US) Search Link to dbEST Database - NCBI (US) dbSTS - Database of Sequence Tagged Sites dbSTS - EBI (UK) dbSTS - NCBI (US) ePCR - User query sequence search against STS primer sequences in dbSTS - NCBI (US) DDBJ - DNA Database of Japan - NIG (Japan) DNA Cloning Vectors Sequence Databases VECTOR - BEN (Belgium) Phabagen Vector Database Search - CBS (The Netherlands) VecBase - CAOS-CAMM (The Netherlands) VECTOR - JHU (US) VectorDB - ATCG (US) EMBL - Nuleotide Sequence Database - EMBnet-Basel (Switzerland) ATLAS - Keyword Search of Nucleotide Databases - MIPS (Germany) DBGET - Integrated Databases Sequence/Information Retreival Service - GenomeNet (Japan) WAIS - DNA Database (EMBL) Keyword Searching - DISC (Japan) EMBL-New Entries - EMBnet-Basel (Switzerland) EMBL Search - Search of EMBL Database - EBI (UK) Search by Accession No. - EBI (UK) ENTREZ - Nucleotide Database Search Server - NCBI (US) SRSWWW - Web-Based Browser of Molecular Biology Resources. (US) EPO - European Patent Office Nucleotide Database - CSC (Finland) GenBank - DNA/Protein Sequence Database - NCBI (US) ATLAS - Keyword Search of Nucleotide Databases - MIPS (Germany) DBGET - Integrated Databases Sequence/Information Retreival Service - GenomeNet (Japan) WAIS - DISC (Japan) Access GenBank - Gene Locus/Accession No. Search & Retrieval of GenBank Entry - VGC (US) ENTREZ - Nucleotide Database Search Server - NCBI (US) Network Clever - Retreive GenBank Sequence Files - IBC-WUSTL (US) Search GenBank Updates Database - NCBI (US) SRSWWW - Web-Based Browser of Molecular Biology Resources (US) GSDB - Genome Sequence DataBase maintained - NCGR (US) HOVERGEN - Vertebrate Genes Database - U Claude Bernard Lyon 1 (France) KEGG - Search Gene Names in KEGG Pathway Database (France) MPDB - Molecular Probe Database of synthetic nucleotides MPDB - EMBL-Heidelberg (Germany) MPDB - InterLab Project (Italy) OPD - Oligonucleotide Probe Database - MSU (US) PCR Primers Database - EBI (UK) Sequence Annotation - NCBI Sequence Annotations - BCM (US) TBASE - Transgenic/Targeted Mutation Database - JHU (US) RNA Sequence Databases BERLIN - 5S rRNA Sequence Database - CAOS-CAMM (The Netherlands) LSu rRNA Database - The rRNA WWW Server (Belgium) RDP - Ribosomal Database Project II - CME (US) SSu rRNA Database - The rRNA WWW Server (Belgium) Multi-Database Search & Retrieval Tools ATLAS - Keyword Search of Nucleotide Databases - MIPS (Germany) DBGET - Integrated Databases Sequence/Information Retreival Service - GenomeNet (Japan) ENTREZ - Nucleotide Database Search Server - NCBI (US) GSDB Maestro - GSDB (US) LocusLink - Cross-DB Sequence & Descriptive Information Searching - NCBI (US) SRSWWW - Web-Based Browser of Molecular Biology Resources (US) WAIS - EMBL DNA Database Keyword Searching - DISC (Japan) DNARNA Structural Information Databases NDB - Nucleic Acids [DNA] Database NDB - EBI (UK) NDB - Rutgers U (US) RNA Secondary Structure Information - U Colorado-Boulder (US) Gene Expression & Translation: cis-Elements & trans-Acting Factors Transcription Factors/Elements Databases EPD - Eukaryotic Promoter Database EPD - EMBL-Heidelberg (Germany) EPD - GenomeNet (Japan) EPD - JHU (US) ooTFD - Transcription Factors Database - Inst Transcriptional Informatics (US) TFFactor - Transcription Factor Database - EMBL-Heidelberg (Germany) TFSITE - Transcriptional Elements Database - EMBL-Heidelberg (Germany) TRANSFAC - Transcription Factor Database - GBF (Denmark) TRRD - Database of Transcription Regulatory Regions - ICG (Russia) Transcriptional Regulation - Information amdS Gene Regulation - Hynes-Davis Lab (Australia) Translational Signals/Elements TransTerm - A Translational Signal Database - U Otago (New Zealand) Standard & Organism-Specific Codon Tables Organism-Specific Codon Tables Countcodon - Tabulation of a Sequence into a codon usage table - DISC (Japan) Search of Codon Usage Database tabulated from CUTG - DISC (Japan) GenBank - DISC (Japan) Species-Specific Condon Tables Anopheles gambiae - (Mosquito) - IUBio (US) Asperigillus nidulans - (Yeast) - IUBio (US) Cricetulus sp & Mesocricetus sp. - (Hamster) - IUBio (US) Dictyostelium discoideum - (Slime Mold) - IUBio (US) Drosophila melanogaster - (Fruit Fly) - IUBio (US) Escherichia coli - IUBio (US) Euglena - (Green Algae) - IUBio (US) Gallus sp. - (Chicken) - IUBio (US) Glycine max - (Soybean) - IUBio (US) Homo sapiens - (Human) - IUBio (US) Hordeum vulgare - (Barley) - IUBio (US) Klebsiella pneumoniae - IUBio (US) Asperigillus nidulans - (Yeast) - IUBio (US) Mus sp. - (Mouse) - IUBio (US) Neurospora crassa - (Filamentous Fungi) - IUBio (US) Nicotianna tabbacum - (Tobacco) Chloroplast - IUBio (US) Nicotianna tabbacum - (Tobacco) - IUBio (US) Nisseria gonorrheae - IUBio (US) Oryctolagus sp. - (Rabbit) - IUBio (US) Oryza sativa - (Rice) - IUBio (US) Ovis sp. - (Sheep) - IUBio (US) Petunia sp. - (Petunia) - IUBio (US) Phaseolus vulgaris - (Lima Bean) - IUBio (US) Bacilus subtilis - IUBio (US) Physarum polycephalum - (Slime Mold) - IUBio (US) Pisum sativum - (Pea) - IUBio (US) Plasmodium falciparum - IUBio (US) Pseudomonas sp. - IUBio (US) Rattus sp. - IUBio (US) Rhizobium meliloti - IUBio (US) Saccharomyces cerevisiae - (Yeast) - IUBio (US) Saccharomyces cerevisiae - (Yeast) Mitochondrion - IUBio (US) Salmonella typhirium - IUBio (US) Schizosaccharomyces pombe - IUBio (US) Bombyx mori - (Silk Moth) - IUBio (US) Solanum tuberosum - (Potato) - IUBio (US) Staphylococcus aureus - IUBio (US) Streptomyces sp. - IUBio (US) Trypanosoma brucei - IUBio (US) Xenopus laevis - (Newt) - IUBio (US) Zea mays - (Corn) - IUBio (US) Zea mays - Corn Chloroplast - IUBio (US) Bos taurus - (Cow) - IUBio (US) Caenorhabditis elegans - (Worm) - IUBio (US) Chironomus sp. - IUBio (US) Chlamydomonas - (Green Algae) - IUBio (US) Chlorella - (Green Algae) - IUBio (US) Standard Eukaryotic Codon Translation Tables (CTT) CTT - VGC (US) CTT - Uniformed Services U (US) Table of Standard Genetic Code - NIH (US) DNA Restriction Enzyme Databases ReBase - Restriction Enzyme Database - NEB (US) ReBase - HGMP Resource Center (UK) ReBase - Univ College (UK) ReBase - NEB (US) Last modified 13 March 2003 by Christopher M. Smith at CMSMBR - SDSC Copyright © 1996-2001 Christopher M. Smith & The Regents of the University of California